Topic: ai-agents
18,135 skills in this topic.
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dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
foryourhealth111-pixel/Vibe-Skills 1,415
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cosmic-database
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
foryourhealth111-pixel/Vibe-Skills 1,415
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receiving-code-review
Use when receiving code review feedback, before implementing suggestions, especially if feedback seems unclear or technically questionable - requires technical rigor and verification, not performative agreement or blind implementation
foryourhealth111-pixel/Vibe-Skills 1,415
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markdown-mermaid-writing
Comprehensive markdown and Mermaid diagram writing skill that establishes text-based diagrams as the DEFAULT documentation standard. Use this skill when creating ANY scientific document, report, analysis, or visualization — it ensures all outputs are in version-controlled, token-efficient markdown with embedded Mermaid diagrams as the source of truth, with clear pathways to downstream Python or AI-generated images. Includes full style guides (markdown + mermaid), 24 diagram type references, and 9 document templates ready to use.
foryourhealth111-pixel/Vibe-Skills 1,415
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diffdock
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
foryourhealth111-pixel/Vibe-Skills 1,415
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local-vco-roles
Codex-local role pack for dialectic multi-agent reviews, designed to be compatible with the local vibe skill.
foryourhealth111-pixel/Vibe-Skills 1,415
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scikit-learn
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.
foryourhealth111-pixel/Vibe-Skills 1,415
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skill-creator
Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Claude's capabilities with specialized knowledge, workflows, or tool integrations.
foryourhealth111-pixel/Vibe-Skills 1,415
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qutip
Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED. Best for physics research, open system dynamics, and educational simulations. NOT for circuit-based quantum computing—use qiskit, cirq, or pennylane for quantum algorithms and hardware execution.
foryourhealth111-pixel/Vibe-Skills 1,415
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embedding-strategies
Select and optimize embedding models for semantic search and RAG applications. Use when choosing embedding models, implementing chunking strategies, or optimizing embedding quality for specific domains.
foryourhealth111-pixel/Vibe-Skills 1,415
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creating-data-visualizations
Generate plots, charts, and graphs from data with automatic visualization type selection. Use when requesting "visualization", "plot", "chart", or "graph". Trigger with phrases like 'generate', 'create', or 'scaffold'.
foryourhealth111-pixel/Vibe-Skills 1,415
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prowler-docs
Prowler documentation style guide and writing standards. Trigger: When writing documentation for Prowler features, tutorials, or guides.
foryourhealth111-pixel/Vibe-Skills 1,415
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cobrapy
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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latex-posters
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
foryourhealth111-pixel/Vibe-Skills 1,415
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latchbio-integration
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
foryourhealth111-pixel/Vibe-Skills 1,415
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adaptyv
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
foryourhealth111-pixel/Vibe-Skills 1,415
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scanpy
Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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commit-with-reflection
Git提交与调试反思报告生成技能。自动分析开发过程中的错误、调试步骤和解决方案,生成结构化的中文反思报告,并创建包含报告引用的Git提交。触发词:反思提交、智能提交、生成调试报告、commit with reflection。
foryourhealth111-pixel/Vibe-Skills 1,415
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structured-content-storage
Enforces structured, highly documented storage for all code and data projects. Auto-activates for: machine learning scripts, data processing, code creation, script modification. Ensures clean directories, comprehensive comments, documentation files (README, data dictionaries, process descriptions, change logs).
foryourhealth111-pixel/Vibe-Skills 1,415
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hmdb-database
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
foryourhealth111-pixel/Vibe-Skills 1,415
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rowan
Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2). Use when tasks involve quantum chemistry calculations, molecular property prediction, DFT or semiempirical methods, neural network potentials (AIMNet2), protein-ligand binding predictions, or automated computational chemistry pipelines. Provides cloud compute resources with no local setup required.
foryourhealth111-pixel/Vibe-Skills 1,415
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datamol
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
foryourhealth111-pixel/Vibe-Skills 1,415
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deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
foryourhealth111-pixel/Vibe-Skills 1,415
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splitting-datasets
Process split datasets into training, validation, and testing sets for ML model development. Use when requesting "split dataset", "train-test split", or "data partitioning". Trigger with relevant phrases based on skill purpose.
foryourhealth111-pixel/Vibe-Skills 1,415