Agent skill

scientific-method

Research methodology for hypothesis testing, evidence evaluation, and verification standards in geoscience research. Use when designing experiments, formulating hypotheses, or evaluating evidence quality.

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npx add-skill https://github.com/majiayu000/claude-skill-registry/tree/main/skills/data/scientific-method

SKILL.md

Scientific Method for Geoscience Research

When to Use This Skill

Invoke when:

  • Formulating or testing hypotheses
  • Designing validation experiments
  • Evaluating strength of evidence
  • Deciding if a finding is confirmed vs preliminary
  • Setting up controls and reproducibility checks

Core Principles

1. Evidence Hierarchy

Apply this hierarchy when evaluating claims:

Level Description Example
Tier 1 Multi-proxy validation δ18O + Mg/Ca + δ13C all show signal
Tier 2 Two independent lines δ18O + historical documentation
Tier 3 Single proxy Only δ18O shows anomaly

2. Verification Standards

Minimum for confident claims:

  • One source = coincidence (interesting but unverified)
  • Two sources = clue (worth investigating)
  • Three sources = verified (minimum for publication)

3. Hypothesis Formulation

Good hypotheses are:

  • Falsifiable: Define what evidence would disprove it
  • Specific: Include testable predictions with measurable outcomes
  • Bounded: State assumptions and limitations upfront

Template:

HYPOTHESIS: [Claim]
PREDICTION: If true, we should observe [specific outcome]
FALSIFICATION: If we observe [contrary evidence], hypothesis is rejected
ASSUMPTIONS: [List key assumptions]

4. Controls and Reproducibility

For each analysis, identify:

  • Positive controls: Known events that SHOULD be detected
  • Negative controls: Periods that SHOULD NOT show signal
  • Blind tests: Analyze data without knowing expected result first

5. Uncertainty Language

Use precise language:

Term Meaning When to Use
"proposed" Unconfirmed hypothesis Single line of evidence
"likely" Probable (2+ sources) Two independent confirmations
"confirmed" Multi-proxy validated Three+ independent lines
"suggests" Indicates direction Preliminary interpretation
"consistent with" Doesn't contradict Supportive but not proof

NEVER use: "100%", "definitely", "certainly", "must be", "proves"

6. Red Flags

Stop and reconsider if:

  • Finding seems too clean/perfect
  • No alternative explanations considered
  • Post-hoc selection of "successful" cases
  • Confirmation bias (looking for expected result)
  • Circular reasoning (using conclusion as premise)

7. Breakthrough Skepticism

When you think you've made a major discovery:

  1. Pause - Don't immediately declare success
  2. Check arithmetic - Verify calculations independently
  3. Seek alternatives - What else could explain this?
  4. Consult literature - Has this been tried before?
  5. Sleep on it - Fresh eyes often find flaws

Workflow for New Hypothesis

1. STATE the hypothesis clearly
2. DEFINE falsification criteria
3. IDENTIFY positive/negative controls
4. GATHER data (ideally blind to expected result)
5. ANALYZE using pre-defined methods
6. EVALUATE against falsification criteria
7. DOCUMENT regardless of outcome
8. REPORT uncertainty honestly

Example: Testing Earthquake Detection

Hypothesis: Speleothem δ18O detects M6+ earthquakes within 50 km

Prediction: Known historical earthquakes should show z > 2.0 anomalies within ±10 years of event

Falsification: If >50% of known earthquakes show no anomaly, hypothesis is rejected

Positive controls: 1896 Independence M6.3 (48 km from Crystal Cave)

Negative controls: Periods with no documented seismicity

Test result: 6/6 positive controls detected → Tier 2 evidence (small n, needs replication)

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