ReddRadar
Agent skill
qiime2-microbiome-analyzer
QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/qiime2-microbiome-analyzer
Metadata
Additional technical details for this skill
- tags
-
metagenomics microbiome 16s diversity
- version
- 1.0
- category
- bioinformatics
SKILL.md
QIIME2 Microbiome Analyzer Skill
Purpose
Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis.
Capabilities
- Demultiplexing and denoising (DADA2)
- Taxonomic classification
- Alpha diversity metrics
- Beta diversity analysis
- Differential abundance testing
- Phylogenetic analysis
Usage Guidelines
- Use DADA2 for denoising amplicon data
- Select appropriate taxonomic classifier
- Calculate diversity metrics with rarefaction
- Visualize beta diversity with ordination
- Test differential abundance appropriately
- Document pipeline parameters
Dependencies
- QIIME2
- DADA2
- phyloseq
Process Integration
- 16S rRNA Microbiome Analysis (16s-microbiome-analysis)
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