Agent skill
nextflow-pipelines-step-2-select-pipeline
Sub-skill of nextflow-pipelines: Step 2: Select Pipeline.
Install this agent skill to your Project
npx add-skill https://github.com/vamseeachanta/workspace-hub/tree/main/.claude/skills/_archive/science/bio-research/nextflow-pipelines/step-2-select-pipeline
SKILL.md
Step 2: Select Pipeline
Step 2: Select Pipeline
DECISION POINT: Confirm with user before proceeding.
| Data Type | Pipeline | Version | Goal |
|---|---|---|---|
| RNA-seq | rnaseq |
3.22.2 | Gene expression |
| WGS/WES | sarek |
3.7.1 | Variant calling |
| ATAC-seq | atacseq |
2.1.2 | Chromatin accessibility |
Auto-detect from data:
python scripts/detect_data_type.py /path/to/data
For pipeline-specific details:
- references/pipelines/rnaseq.md
- references/pipelines/sarek.md
- references/pipelines/atacseq.md
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