Agent skill
nextflow-pipelines-check-completion
Sub-skill of nextflow-pipelines: Check completion (+1).
Install this agent skill to your Project
npx add-skill https://github.com/vamseeachanta/workspace-hub/tree/main/.claude/skills/_archive/science/bio-research/nextflow-pipelines/check-completion
SKILL.md
Check completion (+1)
Check completion
ls results/multiqc/multiqc_report.html
grep "Pipeline completed successfully" .nextflow.log
Key outputs by pipeline
rnaseq:
results/star_salmon/salmon.merged.gene_counts.tsv- Gene countsresults/star_salmon/salmon.merged.gene_tpm.tsv- TPM values
sarek:
results/variant_calling/*/- VCF filesresults/preprocessing/recalibrated/- BAM files
atacseq:
results/macs2/narrowPeak/- Peak callsresults/bwa/mergedLibrary/bigwig/- Coverage tracks
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