ReddRadar
Agent skill
metaphlan-profiler
MetaPhlAn metagenomic profiling skill for species-level community composition
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/metaphlan-profiler
Metadata
Additional technical details for this skill
- tags
-
metagenomics profiling species community
- version
- 1.0
- category
- bioinformatics
SKILL.md
MetaPhlAn Profiler Skill
Purpose
Enable MetaPhlAn metagenomic profiling for species-level community composition.
Capabilities
- Clade-specific marker gene analysis
- Species-level quantification
- Strain-level profiling (StrainPhlAn)
- Unknown species estimation
- Multi-sample heatmaps
- Comparative analysis
Usage Guidelines
- Use latest marker database
- Profile at species level for most analyses
- Apply strain-level analysis when relevant
- Visualize community composition
- Compare across samples and conditions
- Document database versions
Dependencies
- MetaPhlAn4
- StrainPhlAn
- mOTUs
Process Integration
- Shotgun Metagenomics Pipeline (shotgun-metagenomics)
Recommended Agent Skills
Expand your agent's capabilities with these related and highly-rated skills.
a5c-ai/babysitter
gsd-tools
Central utility skill for GSD operations. Provides config parsing, slug generation, timestamps, path operations, and orchestrates calls to other specialized skills. Acts as the unified entry point that the original gsd-tools.cjs provided via its lib/ modules (commands, config, core, init).
a5c-ai/babysitter
model-profile-resolution
Resolve model profile (quality/balanced/budget) at orchestration start and map agents to specific models. Enables cost/quality tradeoffs by selecting appropriate AI models for each agent role.
a5c-ai/babysitter
verification-suite
Plan structure validation, phase completeness checks, reference integrity verification, and artifact existence confirmation. Provides the structured verification layer ensuring GSD artifacts are well-formed and complete.
a5c-ai/babysitter
state-management
STATE.md reading, writing, and field-level updates. Provides cross-session state persistence via .planning/STATE.md with structured fields for current task, completed phases, blockers, decisions, and quick tasks.
a5c-ai/babysitter
git-integration
Git commit patterns, formats, and conventions for GSD methodology. Provides atomic commits per task, structured commit messages, planning file commits, branch management, and milestone tag operations.
a5c-ai/babysitter
frontmatter-parsing
YAML frontmatter parsing and manipulation for .planning/ documents. Provides read, write, update, query, and validation operations on frontmatter blocks in GSD markdown artifacts.
Didn't find tool you were looking for?