Agent skill
maintain
Workspace maintenance with health checks, index rebuilding, task sync, memory gap detection, archival, inbox processing, and reference file updates
Install this agent skill to your Project
npx add-skill https://github.com/majiayu000/claude-skill-registry/tree/main/skills/other/other/maintain-ajayjohn-tars-work-assistant
SKILL.md
Maintain skill: health, sync, rebuild, inbox, and update
Comprehensive workspace maintenance with five distinct modes: running health checks, syncing tasks and detecting gaps, rebuilding all index files, batch-processing inbox items with parallel sub-agents, and updating workspace reference files to match the latest plugin version.
Automatic vs user-initiated operations
Automatic (daily, session-start triggered)
These operations run silently at the start of the first session each day via the core skill's session-start housekeeping check. They require no user interaction and produce no output unless critical issues are found.
| Operation | Script | What it does | Failure behavior |
|---|---|---|---|
| Archival sweep | scripts/archive.py --auto |
Expire ephemeral lines past their [expires:] date, check staleness thresholds, move qualifying files to archive/ |
Log failure, continue session |
| Health check | scripts/health-check.py |
Validate indexes vs files on disk, check for broken wikilinks, flag naming violations | Log failure, continue session |
| Task sync | scripts/sync.py |
Check reference/schedule.md for due recurring/one-time items, scan for orphan tasks |
Log failure, continue session |
| Inbox count | (directory listing) | Count files in inbox/pending/ and update .housekeeping-state.yaml |
Non-critical, skip on error |
| Reference file update | scripts/update-reference.py |
Auto-runs when plugin version differs from workspace plugin_version. Preserves user data via merge strategies. Idempotent. |
Queue P0 notification suggesting manual /maintain update |
Triggering: The core skill's session-start gate reads reference/.housekeeping-state.yaml at session start. It first checks for a plugin version mismatch (auto-updates reference files if needed), then checks staleness and runs the above scripts if last_run is not today. See the core skill's session-start gate for the full sequence and priority-based notification delivery.
User-initiated (explicit command only)
These operations are more expensive, require user judgment, or have side-effects that need confirmation. They are invoked via /maintain <mode> or natural language ("rebuild indexes", "process inbox", "deep sync").
| Operation | Command | Why not automatic |
|---|---|---|
| Full index rebuild | /maintain rebuild |
Rewrites all _index.md files. Expensive for large workspaces. Only needed when indexes are known to be stale or corrupted. |
| Inbox processing | /maintain inbox |
Spawns sub-agents that create tasks and memory entries. Requires user to review and confirm the processing plan before execution. |
| Comprehensive sync | /maintain sync --comprehensive |
Queries MCP sources (project tracker, calendar), scans last 90 days of journal. Higher cost. Surfaces items that need user triage. |
| Reference file update | /maintain update |
Shows dry-run preview and asks for confirmation. Use to inspect changes, force a re-run, or troubleshoot after an auto-update failure. Auto-updates run at session start when a version mismatch is detected (see Automatic table above). |
| Unarchive content | (manual) | Requires user to select specific archived files to restore. No bulk unarchive. |
| Manual health fixes | /maintain health |
Script-detected issues that require human judgment (file renames, broken wikilink resolution, frontmatter corrections). |
Cowork scheduled shortcut
If the user's environment supports Cowork shortcuts with schedules, a daily-housekeeping shortcut can run maintenance on a cron schedule (e.g., 8 AM daily) instead of relying on session-start detection. This is the preferred approach when available, as it runs even on days the user doesn't start a session. See the shortcut definition in the plugin's shortcut registry.
The session-start check in the core skill serves as a fallback: if the scheduled shortcut already ran today, last_run will be current and the session-start check will be a no-op.
Health mode
Scan for workspace issues, auto-fix where safe, and report problems requiring manual intervention.
Step 1: Load workspace state
Read the following indexes:
memory/_index.md(master memory index)memory/decisions/_index.mdmemory/people/_index.mdmemory/initiatives/_index.mdcontexts/products/_index.md(if exists)reference/replacements.md
Step 2: Run health-check.py
python3 scripts/health-check.py {workspace_path}
This script performs deterministic validation: naming pattern checks, frontmatter validation, index synchronization, broken wikilink detection, and replacements coverage (see ARCHITECTURE.md "Maintain skill internals" for detailed procedures). Parse the JSON output:
issuesarray: each withcategory,file,issue,suggested_fixauto_fixesarray: safe fixes already appliedsummarystats: counts by category
If scripts/health-check.py is not available, fall back to manual workspace inspection using the categories in the output format below.
Step 2.5: Auto-fix deterministic issues
After parsing health-check.py JSON, classify each issue by fixability and execute safe auto-fixes.
Auto-fixable (execute immediately):
| Issue category | Fix action | Safety condition |
|---|---|---|
naming (decision files) |
Rename file to the suggested_fix target |
Only if frontmatter date field exists and is valid YYYY-MM-DD |
index (orphan entries) |
Remove orphan row from the category _index.md |
Only if source file confirmed absent from disk |
index (files not in index / stale summaries) |
Run python3 scripts/rebuild-indexes.py {workspace_path} once |
Deterministic index regeneration |
replacements (uncovered names) |
Add ?? placeholder entries to reference/replacements.md |
Existing behavior |
NOT auto-fixable (present to user):
| Issue category | Why |
|---|---|
frontmatter (missing fields) |
Values require user judgment |
frontmatter (invalid status) |
Correct status requires understanding intent |
wikilink (broken references) |
May need entity creation or reference correction |
replacements (with ?? placeholder) |
User must provide canonical name |
Execution procedure:
- Separate
issuesintoauto_fixableandmanual_fixlists using the table above - For naming fixes: parse
suggested_fixto extract target filename, rename via filesystem, verify new path exists - For index orphan fixes: read the
_index.md, remove the orphan entry row, write updated index - For index rebuilds: if any "files not in index" or "stale summaries" issues exist, run
rebuild-indexes.pyonce (covers all index issues in one pass) - For replacements: add
??placeholder entries - Record all executed fixes in an
auto_fixedlist for the report
If any auto-fix fails (file locked, permission error, target exists), demote it to the manual-fix list with the error reason.
Step 3: Run archive.py (optional)
python3 scripts/archive.py {workspace_path} --dry-run
Preview staleness-based archival. If user confirms, run without --dry-run. Parse JSON output: files_archived, expired_lines_removed, archived_files array.
Step 4: Information redundancy check
Duplicate detection
Scan for potential duplicates:
- Same entity name in different folders (e.g., person also exists as initiative)
- Very similar file names in same folder (edit distance < 3)
- Same
aliasesvalues across different files
Cross-reference check
For each person in memory/people/:
- Check if they're referenced in any task (via task integration notes)
- Check if they're referenced in any journal entry
- Flag people with zero references in last 90 days as potentially stale
Health mode output
Generate report in this format:
## Housekeeping report (YYYY-MM-DD)
### Auto-fixed
| Category | File | Issue | Fix applied |
|----------|------|-------|------------|
| naming | decisions/ba-role-definition.md | Missing date prefix | Renamed to 2026-01-15-ba-role-definition.md |
| index | memory/people/_index.md | Orphan entry "Jane Doe" | Removed from index |
| index | (multiple) | Files not in index | Ran rebuild-indexes.py |
| replacements | reference/replacements.md | "JT" uncovered (5 uses) | Added placeholder entry |
### Manual action required
| Category | File | Issue | Suggested fix |
|----------|------|-------|---------------|
| frontmatter | memory/decisions/old.md | Invalid status "pending" | Change to "proposed" |
| wikilink | journal/2026-01/meeting.md | Broken link [[Unknown Person]] | Create memory entry or fix reference |
### Summary
- Auto-fixed: N issues (N renames, N index fixes, N replacement additions)
- Manual action required: N issues
- Workspace health: {healthy | needs attention | degraded}
Sync mode
Sync tasks from integration, detect memory gaps, and triage stale items. Optional flag: --comprehensive for deep scan mode.
Step 1: Load current state
Query task integration (read reference/integrations.md Tasks section for provider details):
- Execute
listoperation for all configured lists (default: Active, Delegated, Backlog) - Execute
overdueoperation
Read:
memory/people/_index.mdmemory/initiatives/_index.md
Step 1.5: Check scheduled items and memory gaps
Run the automated sync script:
python3 scripts/sync.py {workspace_path}
This script checks reference/schedule.md for due items (recurring and one-time) and scans recent journal entries for memory gaps (people and initiatives referenced but not in memory). Parse the JSON output:
schedule.recurring_due: Recurring items past their next-due date. After completion, advancenext-dueto the next occurrence in schedule.md.schedule.onetime_due: One-time items past their due date. After completion, remove the entry from schedule.md.memory_gaps.unknown_people: People referenced in journal but not in memory/people/. Present to user.memory_gaps.unknown_initiatives: Initiatives referenced but not in memory/initiatives/. Present to user.
Surface due items in the report under "Scheduled items." Merge memory gaps with Step 4 output.
If scripts/sync.py is not available, fall back to manual schedule checking:
Read reference/schedule.md if it exists. For each entry:
- [RECURRING]: Check if
next-dueis today or past. If due, add to triage output as "Scheduled item due." - [ONCE]: Check if
dueis today or past. If due, surface it.
Step 2: Sync from project tracker (if available)
If project tracker integration is configured:
- Query for items assigned to user that are not in Active/Delegated tasks
- Query for items recently completed that are still open as tasks
- Present deltas: "Found {N} new items in project tracker not in your tasks. Add them?"
- If accepted, create tasks via the task integration
addoperation in the appropriate list
Step 3: Triage
Scan all reminders/tasks and flag:
| Condition | Flag |
|---|---|
Past due date (from task integration overdue operation) |
OVERDUE |
| Created >30 days ago without update (from notes field) | STALE |
| No initiative in notes field | ORPHAN |
| Owner in notes not in memory/people/ | UNKNOWN OWNER |
Present flagged items grouped by category. For each:
- OVERDUE: "Update due date, complete, or remove?"
- STALE: "Still relevant? Update, move to backlog, or remove?"
- ORPHAN: "Link to an initiative or keep as standalone?"
- UNKNOWN OWNER: "Add this person to memory?"
Step 4: Memory gap detection
Decode all entities referenced in tasks:
- People: Extract all owner names and mentioned people from notes fields. Cross-reference against
memory/people/_index.md. List undefined people. - Initiatives: Extract all
[[Initiative]]references from notes fields. Cross-reference againstmemory/initiatives/_index.md. List undefined initiatives. - Terms: Scan task titles for capitalized terms, acronyms, and project names not in
reference/replacements.mdor memory indexes. List undefined terms.
Present gaps:
## Memory gaps detected
### Undefined people (referenced in tasks but not in memory)
- "Sarah Chen" (owner of 3 tasks) -- Create memory entry?
- "Mike R." (mentioned in 1 task) -- Add to replacements?
### Undefined initiatives
- "Project Phoenix" (linked to 2 tasks) -- Create initiative entry?
### Undefined terms
- "RBAC" (used in 2 task descriptions) -- Add to replacements?
For each gap, ask user to provide brief context, then create the memory entry or replacement.
Sync mode output (default)
## Update complete
| Category | Count |
|----------|-------|
| Tasks synced from project tracker | N |
| Overdue tasks flagged | N |
| Stale tasks flagged | N |
| Orphan tasks flagged | N |
| Memory gaps found | N |
| Memory entries created | N |
| Replacements added | N |
Comprehensive mode (--comprehensive)
All of default mode, PLUS:
Step 5: MCP source scan
If project tracker is configured:
- Query recent items (last 14 days) for action items not captured
- Surface items assigned to user's team members
Query the calendar integration for last 7 days of meetings (see reference/integrations.md Calendar section):
- Resolve the start date (7 days ago) to
YYYY-MM-DDformat, executelist_eventsoperation with offset=7 - Cross-reference against journal entries
- Flag meetings that occurred but have no journal entry: "You had '{Meeting Title}' on {date} but no meeting notes. Process it?"
If calendar integration is not reachable, skip calendar scan and note the gap.
Step 6: Stale memory cleanup
Scan memory for staleness:
- Initiatives tagged
completedthat still have open reminders -> flag - People not referenced in any reminder or journal entry in last 90 days -> flag for review
- Decisions older than 6 months -> flag for relevance check
Present:
## Stale memory candidates
- memory/initiatives/old-project.md -- Tagged completed, 2 open tasks reference it
- memory/people/former-vendor.md -- Not referenced in 90+ days
- memory/decisions/q3-decision.md -- 6+ months old, verify still relevant
Step 7: Entity discovery
From MCP sources scanned in Step 5:
- Surface new people names not in memory
- Surface new project/initiative names not in memory
- Offer to create entries
Comprehensive report
Append to default report:
### Comprehensive scan results
| Category | Count |
|----------|-------|
| Unprocessed meetings found | N |
| New entities from MCP sources | N |
| Stale memory candidates | N |
Rebuild mode
Regenerate all _index.md files from current file contents and frontmatter.
Step 1: Run rebuild-indexes.py
python3 scripts/rebuild-indexes.py {workspace_path}
This script performs deterministic index generation: memory category indexes, master memory index, journal month indexes, contexts/products index, and decision naming validation (see ARCHITECTURE.md "Maintain skill internals" for detailed procedures). Parse the JSON output:
stats: counts of memory categories, journal months, context products, and total entries rebuiltissues: array of problems found (missing-frontmatter, naming-violation, missing-required fields)total_issues: count of all issues
Present stats as the "Indexes regenerated" table. Present issues as the "Issues found" table. The script handles all file I/O — do not duplicate its work by manually reading and rewriting index files.
If scripts/rebuild-indexes.py is not available, fall back to manual index regeneration: scan each memory category, read frontmatter, rebuild _index.md files.
Step 2: Annual rollup (if applicable)
For completed years, generate journal/YYYY-annual-index.md consolidating all month indexes.
Rebuild mode output
Report what was regenerated and any issues found:
## Rebuild complete
### Indexes regenerated
| Area | Count |
|------|-------|
| Memory categories | N |
| Journal months | N |
| Contexts/products | N |
### Issues found
| Type | File | Issue | Suggested fix |
|------|------|-------|---------------|
| missing-frontmatter | path/file.md | No frontmatter | Add required fields |
| naming-violation | decisions/file.md | Missing date prefix | Rename to YYYY-MM-DD-slug.md |
| missing-required | path/file.md | Missing `summary` field | Add summary for index |
Inbox mode
Batch-process all pending items in the inbox using isolated parallel sub-agents. Each item is processed by an independent sub-agent with its own context, ensuring no cross-contamination between items.
Step 1: Scan inbox
List all files in inbox/pending/. For each file:
- Read the first 50 lines to determine content type
- Classify as one of:
transcript,article,email,notes,unknown - Build processing queue with file path, detected type, and file size
If no pending items, report "Inbox is empty" and exit.
Step 2: Present processing plan
Before spawning sub-agents, present the plan to the user:
## Inbox processing plan
| # | File | Detected type | Proposed action |
|---|------|---------------|-----------------|
| 1 | meeting-2026-02-05.txt | transcript | Process as meeting (tasks + memory) |
| 2 | article-ai-strategy.md | article | Extract wisdom |
| 3 | notes-from-call.txt | notes | Extract tasks + memory |
| 4 | unknown-file.txt | unknown | Skip (manual review needed) |
Process all items? (Confirm before proceeding)
Wait for user confirmation before spawning sub-agents. Allow the user to exclude specific items or change detected types.
Step 2.5: Pre-resolve names across all transcript items
Before spawning sub-agents, perform a single pass of name resolution across ALL confirmed transcript items to ensure consistency and minimize user interruptions.
Apply the name resolution protocol (core skill, Memory protocol section):
- For each transcript item, scan for person names
- Cross-reference all names against
reference/replacements.mdandmemory/people/_index.md - For transcript items: query calendar integration for each meeting date to retrieve attendee lists
- Apply contextual resolution from calendar attendees and document context
- If any names remain ambiguous or unknown across ALL files, batch them into a single user clarification
- Build a consolidated name resolution table
Pass the resolution table to each sub-agent in its prompt: "Use these resolved canonical names: Christopher = Christopher Smith, Mick = Michael Johnson"
This prevents: (a) each sub-agent independently guessing different resolutions for the same person, (b) the user being asked the same question by multiple sub-agents, (c) wrong names propagating to memory and tasks.
Skip this step if no transcript items are in the confirmed plan.
Step 3: Parallel sub-agent processing
After user confirmation:
- Move ALL files from
inbox/pending/toinbox/processing/as a sequential batch. Complete all moves before proceeding. - Spawn one sub-agent per inbox item using the Task tool. Launch all sub-agents in a single message for maximum parallelism.
The move-all-first ordering prevents any concurrent session from double-processing items.
Sub-agent common pipeline
Each sub-agent follows this shared pipeline. Type-specific steps are noted below.
Source file: inbox/processing/{filename}
STEP A: Load reference files (MANDATORY before reading source)
- Read reference/replacements.md. Apply canonical names to ALL content.
- If the main agent provided a name resolution table, apply those resolved names.
Do NOT re-resolve names in the table. Only resolve names NOT in the table using replacements.md.
- Read reference/integrations.md (Calendar and Tasks sections) [transcript and notes only].
- Read memory indexes: memory/people/_index.md, memory/initiatives/_index.md, memory/decisions/_index.md.
Required for wikilink validation.
STEP B: Read and process source file (TYPE-SPECIFIC — see below)
STEP C: Extract tasks
- Apply accountability test (never create tasks for "Team" or "We" without a specific lead).
- Check for duplicates across all configured task lists.
- Create via task integration. Resolve relative dates to YYYY-MM-DD.
- Check each tool response. Only count a task as created if the response confirms success.
- After all creation attempts, execute list_reminders for each list that received new tasks.
Verify each task appears by matching title. Add any missing tasks to creation_unverified.
NEVER report tasks as created without verification.
STEP D: Extract durable memory
- Apply durability test to each insight.
- BEFORE writing any [[wikilink]], verify the entity name exists in the memory indexes from Step A.
If not found: add to reference/replacements.md with "?? (needs canonical form)" placeholder
and include in unverified_wikilinks. Do NOT fabricate wikilinks.
- Persist passing insights to memory/. Update relevant _index.md files.
- Use .lock files for memory writes (cowork protocol).
STEP E: Save to journal (TYPE-SPECIFIC filename — see below)
STEP F: Move source file to inbox/completed/{filename}.
Return JSON:
{
"status": "ok" | "partial" | "error",
"source_file": "{filename}",
"content_type": "transcript" | "article" | "notes",
"journal_path": "journal/YYYY-MM/...",
"tasks_created": 0,
"memory_updates": 0,
"creation_unverified": [],
"unverified_wikilinks": [],
"errors": []
}
Status "partial": journal entry was saved but one or more downstream steps failed.
Status "error": the journal entry could not be saved.
Type-specific processing (Step B and Step E)
Transcript — Use the meeting skill pipeline (skills/meeting/SKILL.md) as execution guide:
- Step B: Resolve speaker names (never use generic labels). Query calendar for attendee list, title, organizer. Generate 5-section structured report (Topics, Updates, Concerns, Decisions, Action items).
- Step E: Save as
journal/YYYY-MM/YYYY-MM-DD-meeting-{slug}.mdwith frontmatter: date, title, type: meeting, participants, organizer, topics, initiatives, source.
Article — Use the wisdom extraction pipeline (skills/learn/SKILL.md, Mode B) as execution guide:
- Step B: Classify source type. Apply durability test to each extracted insight. Discard failures.
- Step E: Save as
journal/YYYY-MM/YYYY-MM-DD-wisdom-{slug}.md.
Notes — Direct extraction:
- Step B: Read notes. Identify tasks and durable insights.
- Step E: Save as
journal/YYYY-MM/YYYY-MM-DD-notes-{slug}.md.
Step 4: Collect results and handle failures
After all sub-agents complete, collect JSON results from each sub-agent and evaluate status:
Status "ok": All steps completed successfully. No action needed beyond reporting.
Status "partial": The journal entry was saved but one or more downstream steps failed.
- Do NOT move the source file to
inbox/failed/(the journal entry exists and is valid). - Source file is already in
inbox/completed/(sub-agent moved it). - In the consolidated report, flag the item with status "partial" and list which steps failed (derive from the
errors[]array). - Surface any
unverified_wikilinks[]so the user can resolve them. - Surface any
creation_unverified[]tasks prominently so the user knows to check.
Status "error": The journal entry could not be saved. The sub-agent failed entirely.
- Move the source file from
inbox/processing/toinbox/failed/. - Create a companion
.errorfile atinbox/failed/{filename}.errorcontaining theerrors[]array.
Generate consolidated report (format defined in "Inbox mode output" below).
Sub-agent input/output contracts (inbox mode)
| Content type | Input | Output | Failure mode |
|---|---|---|---|
| Transcript | Source file, replacements.md, integrations.md, memory indexes (people, initiatives, decisions) | JSON: journal path, tasks created, memory updates, creation unverified, unverified wikilinks | ok/partial: source to completed; error: source to failed with .error file |
| Article | Source file, replacements.md, memory indexes (people, initiatives, decisions) | JSON: journal path, insights persisted, tasks created, creation unverified, unverified wikilinks | ok/partial: source to completed; error: source to failed with .error file |
| Notes | Source file, replacements.md, integrations.md, memory indexes (people, initiatives, decisions) | JSON: journal path, tasks created, memory updates, creation unverified, unverified wikilinks | ok/partial: source to completed; error: source to failed with .error file |
Shared constraints for all inbox sub-agents:
- Each sub-agent operates with fully isolated context
- Each sub-agent reads its own copy of reference files (no shared state)
- Memory writes must use
.lockfiles (see core skill cowork protocol) - Task creation checks for duplicates independently per sub-agent
- Task creation MUST be verified via
list_remindersafter all creation attempts - If a sub-agent fails, other sub-agents continue unaffected
Inbox mode output
## Inbox processing complete
### Processed items
| # | File | Type | Journal | Tasks | Memory | Status |
|---|------|------|---------|-------|--------|--------|
| 1 | meeting-2026-02-05.txt | transcript | journal/2026-02/... | 3 | 2 | ok |
| 2 | article-ai-strategy.md | article | journal/2026-02/... | 0 | 4 | partial (tasks failed) |
| 3 | notes-from-call.txt | notes | journal/2026-02/... | 2 | 1 | ok |
### Partial items
| File | Journal saved | Failed steps | Unverified wikilinks | Unverified tasks |
|------|---------------|-------------|----------------------|------------------|
| article-ai-strategy.md | journal/2026-02/... | tasks (0 created) | [[Unknown Vendor]] | -- |
### Failed items
| File | Error |
|------|-------|
| (none) | |
### Summary
- Items processed: N (ok: N, partial: N)
- Items failed: N
- Tasks created: N (total across all items, verified via list_reminders)
- Tasks unverified: N (created but not confirmed in list)
- Memory updates: N (total across all items)
- Journal entries created: N
- Unverified wikilinks: N (names not found in memory indexes)
Progress tracking (TodoWrite) for inbox mode
1. Scan inbox and classify items [in_progress → completed]
2. Present processing plan for approval [pending → completed]
3. Process item: {filename1} (parallel) [pending → completed]
4. Process item: {filename2} (parallel) [pending → completed]
5. Process item: {filename3} (parallel) [pending → completed]
6. Collect results and generate report [pending → completed]
Mark all item-processing todos as in_progress simultaneously when spawning sub-agents. Mark each completed as its sub-agent returns.
Update mode
Update workspace reference files to match the installed plugin version. Preserves user customizations (name replacements, KPI definitions, schedule items) while applying structural changes from plugin updates.
Step 1: Version check
Read reference/.housekeeping-state.yaml for plugin_version.
Read the plugin's .claude-plugin/plugin.json for the current version.
If both versions match, report "Workspace reference files are up to date (v{version})" and exit.
If the workspace has no plugin_version field, this is the first update — proceed.
Step 2: Dry-run preview
Run the update script in preview mode:
python3 scripts/update-reference.py {workspace_path} {plugin_path} --dry-run
Parse the JSON output and present to the user:
## Reference file update preview (v{old} → v{new})
### Files to update
| File | Action | User data preserved |
|------|--------|-------------------|
| taxonomy.md | Full replace | (none — no user data) |
| integrations.md | Section merge | status: configured (Tasks) |
### New files to create
| File | Description |
|------|-------------|
| shortcuts.md | Command reference |
### Files unchanged
- replacements.md, schedule.md
### Warnings
- (any conflicts or issues)
Proceed with update?
Wait for user confirmation.
Step 3: Apply update
After user confirmation, run without --dry-run:
python3 scripts/update-reference.py {workspace_path} {plugin_path}
Parse the JSON output and report:
## Reference files updated (v{new})
- Files updated: N
- Files created: N
- Files unchanged: N
- User data preserved: (list)
- Warnings: (list)
When the script is not available
If scripts/update-reference.py is not found, provide manual update guidance:
-
Safe to overwrite (no user data):
taxonomy.md,workflows.md,shortcuts.md,guardrails.yaml- Copy from plugin source directly
-
Requires manual merge (contain user data):
integrations.md: Copy new constraint rules from plugin, keep yourstatus:fieldsreplacements.md: Copy updated header/instructions from plugin, keep your name/team/product rowsschedule.md: Copy updated format spec from plugin, keep your recurring/one-time itemskpis.md: Copy updated header/instructions from plugin, keep your team/initiative sections
-
State files (machine-managed):
.housekeeping-state.yaml,maturity.yaml- Add any new keys from plugin source, keep existing values
Update mode output
## Update complete
| Category | Count |
|----------|-------|
| Files updated | N |
| Files created | N |
| Files unchanged | N |
| User data preserved | N sections |
| Warnings | N |
Script invocation for health mode
Before performing manual checks, run the automated scripts for deterministic validation:
Step 0: Run health-check.py
python3 scripts/health-check.py {workspace_path}
This script performs Steps 2-6 deterministically (naming validation, frontmatter checks, index sync, wikilink detection, replacements coverage). Parse the JSON output and use it to populate the issues table in the report. Only manually investigate items the script cannot assess (Step 7: information redundancy, cross-reference depth).
Step 0b: Run archive.py (optional)
python3 scripts/archive.py {workspace_path}
or for preview only:
python3 scripts/archive.py {workspace_path} --dry-run
This script scans memory files for staleness and archives expired content. Run with --dry-run first to preview, then confirm with the user before running without the flag. Parse the JSON output and include archived file counts in the report.
Interpreting script output
The scripts return JSON. Key fields:
health-check.py:issuesarray (each with category, file, issue, suggested_fix),auto_fixesarray,summarystatsarchive.py:files_archived,expired_lines_removed,archived_filesarray with paths and reasons
Present the findings using the output format above. For auto-fixes, apply them and note what was done. For manual-fix items, present to the user for confirmation.
Context budget
Health mode:
- Memory indexes: Read all
_index.mdfiles - Memory files: Scan frontmatter only (not full content) unless checking wikilinks
- Journal: Scan last 30 days of entries
- Reference: Read
replacements.md
Sync mode:
- Task integration: Up to 3 queries per list
- Memory indexes: Read people and initiatives indexes
- Schedule: Read
reference/schedule.mdif exists - Project tracker: Up to 3 queries per team
- Calendar: Last 7 days of events (comprehensive mode)
- Journal: Scan last 90 days for staleness and entity discovery (comprehensive mode)
Rebuild mode:
- Memory: Scan all files in all categories
- Journal: Scan all month folders
- Contexts: Scan products folder (if exists)
- Reference: None required
Inbox mode:
- Main agent: Read
inbox/pending/file list + first 50 lines of each file for classification - Each sub-agent: Read its assigned source file +
reference/replacements.md+reference/integrations.md+memory/people/_index.md+memory/initiatives/_index.md+memory/decisions/_index.md(all three indexes mandatory for wikilink validation) +list_remindersqueries for task verification - Sub-agents have isolated context; budget is per-item, not cumulative
Absolute constraints
Universal constraints from the core skill apply (wikilink mandate, task verification, integration constraints, no deletion without instruction). Additionally:
Health mode:
- NEVER delete files (only suggest deletions with user confirmation)
- NEVER modify file content (only metadata like replacements and index entries)
- NEVER change wikilink targets without user approval
- Auto-fix scope: Execute deterministic fixes (file renames from frontmatter dates, index orphan removal, index rebuilds, replacement placeholder additions). Present non-deterministic issues (missing frontmatter values, invalid enums, broken wikilinks) to the user. If an auto-fix fails, demote to manual.
Sync mode:
- NEVER create or modify tasks without user approval
- NEVER fabricate data from missing integrations (report gaps)
- NEVER skip memory gap detection
Rebuild mode:
- NEVER modify file content (only regenerate indexes)
- ALWAYS validate decision naming patterns and report missing frontmatter
- NEVER skip any category
Inbox mode:
- NEVER process items without user confirmation of the processing plan
- NEVER delete source files (move to completed/ or failed/, never remove)
- ALWAYS create .error companion files for failed items
- ALWAYS use
.lockfiles for memory writes from parallel sub-agents - NEVER spawn sub-agents for items classified as
unknown(require manual review) - ALWAYS move ALL
inbox/pending/files toinbox/processing/BEFORE spawning any sub-agents
Documentation note
When building future functionality, consider whether the housekeeping script should be updated to include relevant validation elements.
Recommended Agent Skills
Expand your agent's capabilities with these related and highly-rated skills.
agent-ops-spec
Manage specification documents in .agent/specs/. Use when user provides requirements, acceptance criteria, or feature descriptions that need to be tracked and validated against implementation.
agent-ops-state
Maintain .agent state files. Use at session start, after meaningful steps, and before concluding: read/update constitution/memory/focus/issues/baseline consistently.
agent-ops-spec
Manage specification documents in .agent/specs/. Use when user provides requirements, acceptance criteria, or feature descriptions that need to be tracked and validated against implementation.
agent-ops-testing
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agent-ops-testing
Test strategy, execution, and coverage analysis. Use when designing tests, running test suites, or analyzing test results beyond baseline checks.
agent-ops-state
Maintain .agent state files. Use at session start, after meaningful steps, and before concluding: read/update constitution/memory/focus/issues/baseline consistently.
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