ReddRadar
Agent skill
kraken2-taxonomic-classifier
Kraken2 taxonomic classification skill for rapid metagenomic read assignment
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/kraken2-taxonomic-classifier
Metadata
Additional technical details for this skill
- tags
-
metagenomics taxonomy classification kraken
- version
- 1.0
- category
- bioinformatics
SKILL.md
Kraken2 Taxonomic Classifier Skill
Purpose
Provide Kraken2 taxonomic classification for rapid metagenomic read assignment.
Capabilities
- k-mer based classification
- Custom database creation
- Confidence score filtering
- Bracken abundance estimation
- Multi-sample reporting
- Memory-efficient operation
Usage Guidelines
- Build or download appropriate databases
- Set confidence thresholds for accuracy
- Use Bracken for abundance estimation
- Generate reports for visualization
- Consider memory requirements
- Document database versions
Dependencies
- Kraken2
- Bracken
- Centrifuge
Process Integration
- Shotgun Metagenomics Pipeline (shotgun-metagenomics)
- 16S rRNA Microbiome Analysis (16s-microbiome-analysis)
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