Agent skill
instrument-data-allotrope-installing-allotropy
Sub-skill of instrument-data-allotrope: Installing allotropy (+2).
Install this agent skill to your Project
npx add-skill https://github.com/vamseeachanta/workspace-hub/tree/main/.claude/skills/_archive/science/bio-research/instrument-data-allotrope/installing-allotropy
SKILL.md
Installing allotropy (+2)
Installing allotropy
pip install allotropy --break-system-packages
Handling parse failures
If allotropy native parsing fails:
- Log the error for debugging
- Fall back to flexible parser
- Report reduced metadata completeness to user
- Suggest exporting different format from instrument
ASM Schema Validation
Validate output against Allotrope schemas when available:
import jsonschema
# Schema URLs in references/asm_schema_overview.md
Recommended Agent Skills
Expand your agent's capabilities with these related and highly-rated skills.
gsd-complete-milestone
Archive completed milestone and prepare for next version
gsd-reapply-patches
Reapply local modifications after a GSD update
gsd-verify-work
Validate built features through conversational UAT
gsd-thread
Manage persistent context threads for cross-session work
clinical-trial-protocol
Generate clinical trial protocols for medical devices or drugs through a modular, waypoint-based architecture with research-only and full protocol modes.
single-cell-rna-qc
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
Didn't find tool you were looking for?