ReddRadar
Agent skill
gsea-pathway-analyzer
Gene Set Enrichment Analysis skill for functional annotation and pathway interpretation
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/gsea-pathway-analyzer
Metadata
Additional technical details for this skill
- tags
-
transcriptomics pathway-analysis gsea functional
- version
- 1.0
- category
- bioinformatics
SKILL.md
GSEA Pathway Analyzer Skill
Purpose
Enable Gene Set Enrichment Analysis for functional annotation and pathway interpretation.
Capabilities
- Preranked GSEA execution
- Gene ontology enrichment
- KEGG/Reactome pathway analysis
- Custom gene set support
- Leading edge analysis
- Publication-ready visualizations
Usage Guidelines
- Rank genes appropriately for analysis type
- Select relevant gene set collections
- Apply multiple testing correction
- Identify leading edge genes for interpretation
- Generate clear visualizations
- Document gene set versions
Dependencies
- GSEA
- clusterProfiler
- g:Profiler
- Enrichr
Process Integration
- RNA-seq Differential Expression Analysis (rnaseq-differential-expression)
- Single-Cell RNA-seq Analysis (scrnaseq-analysis)
- Multi-Omics Data Integration (multi-omics-integration)
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