ReddRadar
Agent skill
fusion-gene-detector
Gene fusion detection skill for oncology applications with multiple caller integration
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/fusion-gene-detector
Metadata
Additional technical details for this skill
- tags
-
clinical-genomics oncology fusions rna-seq
- version
- 1.0
- category
- bioinformatics
SKILL.md
Fusion Gene Detector Skill
Purpose
Enable gene fusion detection for oncology applications with multiple caller integration.
Capabilities
- RNA-based fusion calling
- DNA-based fusion detection
- Multi-caller consensus
- Visualization of fusion events
- Known fusion annotation
- Clinical actionability assessment
Usage Guidelines
- Use multiple callers for sensitivity
- Build consensus from different algorithms
- Annotate with known fusion databases
- Visualize fusion breakpoints
- Assess clinical actionability
- Document caller combinations
Dependencies
- STAR-Fusion
- Arriba
- FusionCatcher
Process Integration
- Tumor Molecular Profiling (tumor-molecular-profiling)
- RNA-seq Differential Expression Analysis (rnaseq-differential-expression)
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