Agent skill
dex-obsidian-setup
Enable Obsidian integration and migrate existing vault to wiki links
Install this agent skill to your Project
npx add-skill https://github.com/davekilleen/Dex/tree/main/.claude/skills/dex-obsidian-setup
SKILL.md
Purpose
Convert Dex vault to Obsidian wiki link format for graph-based navigation.
Step 1: Check Current State
Read System/user-profile.yaml and check obsidian_mode field.
If already enabled:
- Say: "Obsidian mode is already enabled. Want to re-run migration? (Safe to run multiple times)"
- If user says no, exit
- If user says yes, continue to Step 3 (skip Step 2)
If not enabled:
- Continue to Step 2
Step 2: Explain Obsidian Integration
Say: "This will enable Obsidian mode in your Dex vault:
What changes:
- All person/company/project references become clickable wiki links
- Example:
John_Doe→[[John_Doe]] - Your existing files will be converted automatically
What stays the same:
- File structure (PARA folders)
- File contents (just adds
[[ ]]around references) - All MCP functionality
Time estimate: I'll scan your vault first and show you exactly how long it will take.
Safety: I'll create a git backup before any changes. Easy to revert if needed.
Ready to proceed?"
If NO: Say "No problem! You can run /dex-obsidian-setup anytime." and exit.
If YES: Continue to Step 3
Step 3: Run Migration
Call the migration script using Shell tool (run from the vault root directory):
python core/obsidian/migrate_to_wikilinks.py
The script handles:
- Estimation and user confirmation
- Git backup
- Progress tracking
- macOS notification on completion
- Error handling
Wait for the script to complete and show the output to the user.
Step 4: Update User Profile
Update System/user-profile.yaml to set obsidian_mode: true:
- Read the current file
- Use StrReplace to update the obsidian_mode field (or add it if missing)
- If the file uses YAML format, preserve the structure
Step 5: Optional - Generate Obsidian Config
Ask: "Want me to generate an Obsidian configuration optimized for Dex? This includes:
- Recommended settings (wiki link format, auto-update links)
- Hotkeys for common actions (Cmd+G for graph view)
- Workspace layout (file explorer + backlinks)
These are stored in .obsidian/ and only affect Obsidian (not Cursor/terminal)."
If YES:
Run the config generator (from vault root):
python core/obsidian/generate_obsidian_config.py
Say: "✅ Obsidian config generated! Open your vault in Obsidian to see the optimized setup."
If NO:
Say: "No problem! You can always run this later with python core/obsidian/generate_obsidian_config.py"
Step 6: Optional - Start Sync Daemon
Ask: "Want to enable bidirectional sync? This keeps task checkboxes synced between Obsidian and Dex:
- Check a task in Obsidian → syncs to Tasks.md, person pages, meeting notes
- Check a task in Cursor → syncs to Obsidian
Runs in background, zero maintenance."
If YES:
Run the daemon installer (from vault root):
bash core/obsidian/install_sync_daemon.sh
If NO:
Say: "No problem! You can enable it later by running bash core/obsidian/install_sync_daemon.sh"
Step 7: Completion
Say: "✅ Obsidian mode enabled!
Next steps:
- Open Obsidian: File → Open Folder → select your Dex vault folder
- Check the graph view: Ctrl/Cmd + G
- Click any wiki link to navigate
Tips:
- Graph filters: Focus on specific areas (People, Projects)
- Search: Cmd/Ctrl + O for quick open
- Backlinks pane: See everywhere a note is referenced
Resources:
- See
06-Resources/Dex_System/Obsidian_Guide.mdfor detailed tips - Watch the beginner's guide if you're new to Obsidian
You can still use Dex in Cursor/terminal exactly as before. Wiki links work everywhere."
Notes
- This skill is safe to run multiple times (idempotent)
- Migration creates a git backup before making changes
- Revert anytime with
git reset --hard HEAD~1 - Works with vaults of any size (10K+ files tested)
Track Usage (Silent)
Update System/usage_log.md to mark Obsidian setup as used.
Analytics (Silent):
Call track_event with event_name obsidian_enabled (no properties).
This only fires if the user has opted into analytics. No action needed if it returns "analytics_disabled".
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