ReddRadar
Agent skill
alphafold-predictor
AlphaFold protein structure prediction skill with confidence assessment and model analysis
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/alphafold-predictor
Metadata
Additional technical details for this skill
- tags
-
structural-biology structure-prediction alphafold protein
- version
- 1.0
- category
- bioinformatics
SKILL.md
AlphaFold Predictor Skill
Purpose
Enable AlphaFold protein structure prediction with confidence assessment and model analysis.
Capabilities
- Structure prediction execution
- pLDDT confidence scoring
- PAE analysis
- Multi-chain complex prediction
- Template-based refinement
- ColabFold integration
Usage Guidelines
- Review pLDDT scores for prediction confidence
- Analyze PAE for domain boundaries
- Predict complexes for multi-protein assemblies
- Use templates when homologs exist
- Validate predictions against experimental data
- Document model versions and parameters
Dependencies
- AlphaFold2
- ColabFold
- RoseTTAFold
Process Integration
- Protein Structure Prediction (protein-structure-prediction)
- Molecular Docking and Virtual Screening (molecular-docking)
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